CV

Education

Visiting Scholar: Research Assistant
- College of Biological Sciences, University of Minnesota, Twin City
- Duties included: Bioinformatic workflow development
- Supervisor: Professor Yue Chen

Operating Systems: Linux • Windows • Mac OS
Scripting, Programming & Analytics: Bash • R • tidyverse • Python • Perl • JAVA • MATLAB
Bioinformatic Stack: Genomics data processing and analyses • Metagenomics data processing and analyses • Transcriptomics data processing and analyses • Proteomics data analysis • Statistical analyses • Multi-omic data integration • Genome-wide association studies (GWAS) • RNA-seq analyses • IQ-Tree/Molecular clock modeling • Single-cell genomic analyses • Gene/Genome ontology annotation analyses • Bioconda/Miniconda
Productivity Stack: git code version control • LATEX2εtypesetting • Vim text editor • oarsub and slurm High-Performance Computing (HPC) job scheduler • Microsoft Office

Molecular biology & biochemistry: Real-time quantitative PCR • Mutagenesis • RNA interference • Inter simple sequence repeat analysis • Isoenzyme analysis • DNA/RNA/Protein extraction & purification of bacteria/plant/mammalian cells
Environmental science & technology: Water quality analysis • Flow cytometry • Biomass filtration in wastewater treatment • Viral isolation from wastewater • Nucleic acid extraction • High-throughput sequencing & library preparation • Long-read sequencing & library preparation
Structual biology: Protein crystallization • Synchrotron data collection • Data processing and structure determination (HKL2000, Phenix, CCP4i, Coot, PyMOL)
Cell biology: Cell culture and transfection • Immunofluorescence • Karyotype detection • Cell cloning & differentiation